TAP SWI/SNF_BAF60b in Spirogyra sp.

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Zygnemophyceae; Zygnematophycidae; Zygnematales; Zygnemataceae; Spirogyra; unclassified Spirogyra

Protein source: Delaux et al. (2015) Proc Natl Acad Sci U S A 112:13390-5


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

SWIB

(Domain names are clickable)



List of proteins (21)

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namename additionClick button to show/hide sequence: Download sequence?
c0_seq58_3_rccomp11353_c0_seq58_3 [935 - 348] (REVERSE SENSE) len=1572 path=[7225:0-469 7695:470-640 7866:641-913 27908:914-914 8139:915-1004 8229:1005-1165 8390:1166-1261 8486:1262-1344 24353:1345-1571]
c0_seq63_3_rccomp11353_c0_seq63_3 [935 - 348] (REVERSE SENSE) len=1309 path=[7225:0-469 7695:470-640 7866:641-913 27908:914-914 8139:915-1004 8229:1005-1165 8390:1166-1261 25585:1262-1308]
c0_seq64_3_rccomp11353_c0_seq64_3 [667 - 131] (REVERSE SENSE) len=1304 path=[25147:0-201 7695:202-372 7866:373-645 27908:646-646 8139:647-736 8229:737-897 8390:898-993 8486:994-1076 24353:1077-1303]
c0_seq66_3_rccomp11353_c0_seq66_3 [667 - 131] (REVERSE SENSE) len=1041 path=[25147:0-201 7695:202-372 7866:373-645 27908:646-646 8139:647-736 8229:737-897 8390:898-993 25585:994-1040]
c0_seq1_2_rccomp2156_c0_seq1_2 [695 - 330] (REVERSE SENSE) len=695 path=[1:0-149 151:150-694]
c0_seq2_2_rccomp2156_c0_seq2_2 [665 - 300] (REVERSE SENSE) len=665 path=[1469:0-119 151:120-664]
c0_seq1_11_rccomp6483_c0_seq1_11 [2175 - 451] (REVERSE SENSE) len=2177 path=[1:0-239 4141:240-449 241:450-922 714:923-2176]
c0_seq2_11_rccomp6483_c0_seq2_11 [1965 - 178] (REVERSE SENSE) len=1967 path=[1:0-239 241:240-712 714:713-1966]
c0_seq3_8_rccomp6483_c0_seq3_8 [1505 - 180] (REVERSE SENSE) len=1507 path=[4604:0-206 5453:207-208 4813:209-252 714:253-1506]
c0_seq4_4_rccomp6483_c0_seq4_4 [951 - 451] (REVERSE SENSE) len=1183 path=[1:0-239 4141:240-449 241:450-922 5453:923-924 5134:925-1182]
c0_seq5_4_rccomp6483_c0_seq5_4 [741 - 178] (REVERSE SENSE) len=973 path=[1:0-239 241:240-712 5453:713-714 5134:715-972]
c1_seq1_2[173 - 1051] len=1983 path=[1:0-578 580:579-1042 4419:1043-1416 1044:1417-1982]
c1_seq2_2[173 - 1303] len=1609 path=[1:0-578 580:579-1042 1044:1043-1608]
c1_seq1_8[441 - 3131] len=7230 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 23966:3780-4226 3550:4227-4337 22733:4338-5077 3661:5078-5148 21422:5149-5399 3732:5400-7229]
c1_seq2_8[441 - 3131] len=6979 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 23966:3780-4226 3550:4227-4337 22733:4338-5077 3661:5078-5148 3732:5149-6978]
c1_seq3_8[441 - 3131] len=6783 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 3550:3780-3890 22733:3891-4630 3661:4631-4701 21422:4702-4952 3732:4953-6782]
c1_seq4_8[441 - 3131] len=6532 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 3550:3780-3890 22733:3891-4630 3661:4631-4701 3732:4702-6531]
c1_seq5_8[441 - 3131] len=6490 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 23966:3780-4226 3550:4227-4337 3661:4338-4408 21422:4409-4659 3732:4660-6489]
c1_seq6_8[441 - 3131] len=6239 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 23966:3780-4226 3550:4227-4337 3661:4338-4408 3732:4409-6238]
c1_seq7_8[441 - 3131] len=6043 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 3550:3780-3890 3661:3891-3961 21422:3962-4212 3732:4213-6042]
c1_seq8_8[441 - 3131] len=5792 path=[11077:0-3100 25300:3101-3101 2872:3102-3779 3550:3780-3890 3661:3891-3961 3732:3962-5791]
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum